Biochemistry & Biophysics

11 Items

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  • Authors: Fangzhou Lu, Xiaoshuang Huang, Guanxing Cai, Yuzhen Xie, Xiao Fan, Jian Huang
    Abstract:

    Human M-channels, primarily assembled by heteromeric KCNQ2/KCNQ3 subunits, are critical regulators of neuronal excitability, and loss-of-function mutations in either subunit are linked to epileptic disorders. Yet, the molecular mechanisms underlying heteromeric assembly, gating, and pharmacological modulation have remained largely elusive. Here, we present high-resolution...

    Keywords: M channel; KCNQ; heteromeric assembly
    Timeline: First Posted 2025-12-17 | Last Updated 2025-12-17
    Metrics: Views: 371  |  Downloads: 364  |  Favorites: 2
  • Authors: Yifei Wang, Hui Yang, Yannan Qu, Junnan Li, Xiao Li, Wenxin Hou, Kun Wu, Guanglei Xie, Xi Wang, Yangliang Ye, Huaiyu Yang, Huaizong Shen
    Abstract:

    The M-channel, a heterotetrameric voltage-gated potassium channel formed by KCNQ2 and KCNQ3 subunits, critically regulates neuronal excitability, with dysfunction linked to epilepsy and developmental encephalopathies. Despite its physiological importance, structural mechanisms governing its unique heteromeric assembly...

    Keywords: M-Channel; Heteromeric channel; Structural biology
    Timeline: First Posted 2025-12-16 | Last Updated 2025-12-16
    Metrics: Views: 280  |  Downloads: 161  |  Favorites: 2
  • Authors: Xiaojuan Yu, Zhaoxing Wang, Chengshi Zeng, Ruifeng Zhang, Qing Chang, Wendan Chu, Qinghua Ma, Ke Ma, Lan Wang, Chuanfei Yu, Wenqi Li
    Abstract:

    As essential biomolecules composed of proteins and carbohydrate moieties, glycoproteins play pivotal roles in numerous biological processes. The glycosylation level plays a crucial role in determining the functionality of glycoproteins. Therefore, the precise quantification of glycan components in proteins holds significant importance for research on and...

    Keywords: Glycoprotein; Quantification; Analytical ultracentrifugation; AUCAgent
    Timeline: First Posted 2025-12-13 | Last Updated 2025-12-14
    Metrics: Views: 243  |  Downloads: 98  |  Favorites: 0  |  Versions: 2
  • Authors: Mengze Shen, Zhiyuan Zhao, Haolin Zhang, Qiunan Ren, Xi Kong, Zhiping Yang, Tianyu Xie, Ke Ruan, Shengqi Xiang, Fazhan Shi, Jiangfeng Du
    Abstract:

    Biomolecular condensates formed through liquid–liquid phase separation (LLPS) organize essential cellular functions as membraneless organelles. Understanding their internal atomic-level chemistry is critical, but inaccessible to classical nuclear magnetic resonance (NMR) due to their picoliter volumes. While emerging quantum sensing has extended NMR to this scale, applying this capability to...

    Keywords: Nitrogen-vacancy; Quantum sensing; Protein phase separation; Nuclear Magnetic Resonance
    Timeline: First Posted 2025-12-10 | Last Updated 2025-12-10
    Metrics: Views: 486  |  Downloads: 272  |  Favorites: 2
  • Authors: Zhiyuan Zhao, Qian Shi, Shaoyi Xu, Xiangyu Ye, Mengze Shen, Jia Su, Ya Wang, Tianyu Xie, Qingsong Hu, Fazhan Shi, Jiangfeng Du
    Abstract:

    Identification of individual cells within heterogeneous populations is essential for biomedical research and clinical diagnostics. Conventional labeling-based sorting methods, such as fluorescence-activated cell sorting and magnetic-activated cell sorting, enable precise sorting when reliable markers are available. However, their applicability is limited in cells lacking defined markers or...

    Keywords: Single cell; Nitrogen-vacancy center; Nuclear magnetic resonance; Quantum sensing
    Timeline: First Posted 2025-12-09 | Last Updated 2025-12-09
    Metrics: Views: 563  |  Downloads: 330  |  Favorites: 1
  • Authors: XIAO FAN, Jiaofeng Chen, Lingfeng Xue, Huan Wang, Tong Wu, Xiaoshuang Huang, Fangzhou Lu, Xueqin Jin, Chen Song, Jian Huang, Nieng Yan
    Abstract:

    Almost all the reported cryo-EM structures of eukaryotic voltage-gated sodium (Nav) channels, including those of human Nav1.1-Nav1.8, represent various inactivated states that are characteristic of a non-conductive pore domain (PD) surrounded by...

    Keywords: Voltage gated sodium channel; Open-state; Fast inactivation; Veratridine
    Timeline: First Posted 2025-11-18 | Last Updated 2025-12-04
    Metrics: Views: 6627  |  Downloads: 5118  |  Favorites: 6  |  Versions: 2
  • Authors: Zhe Zhang, Jian Zhan, Yaoqi Zhou
    Abstract:

    The landscape of catalytic RNA in complex eukaryotes remains poorly charted. Although self- cleaving ribozymes are widespread in microbial and viral genomes, their existence and functional roles in humans remain limited. Here, we introduce a generalizable, genome-wide discovery platform that integrates...

    Keywords: Self-Cleaving Ribozyme; RNA catalysis
    Timeline: First Posted 2025-12-03 | Last Updated 2025-12-03
    Metrics: Views: 546  |  Downloads: 348  |  Favorites: 1
  • Authors: Mingxu Hu, Sheng Chen, Tongtong Wang, Lanju Qin, Qi Zhang, Yilin Zhang, Qijun Ge, Tiantian Chen, Meng Li, Caiwen Li, Guorui Xu, Qihui Gui, Zhangqiang Li, Nieng Yan
    Abstract:

    With CryoSeek, a structure-first paradigm for discovery, we have determined high resolution 3D structures of a number of glycofibrils, in which well-ordered glycans either form a thick shell coating various protein cores or constitute the entire fibril. To improve the throughput of CryoSeek, we hereby report two methods. The recursive bisection clustering...

    Keywords: High-throughput cryo-EM; Glycobiology; Model building; Database; Structural biology
    Timeline: First Posted 2025-11-20 | Last Updated 2025-11-20
    Metrics: Views: 3331  |  Downloads: 2267  |  Favorites: 4
  • Authors: Ge Liao, Ruolan Sun, Zilin Shen, Zhiteng Luo, Cuiping Pang, Zhuanglin Shen, Anfu Wei, Chengneng Mi, Gengfan Wu, Yong-Xin Li, Kin Kuan HOI, Xiaojing Pan, Xiaoyu Tang
    Abstract:

    The functional diversification of biosynthetic enzymes underlies the chemical richness of natural products, yet how primary metabolic enzymes...

    Keywords: Thiolase; Enzyme complex; Friedel-Crafts acylation; Biosynthesis; Functional evolution
    Timeline: First Posted 2025-11-18 | Last Updated 2025-11-18
    Metrics: Views: 1045  |  Downloads: 635  |  Favorites: 4
  • Authors: Kun Cui, Qiuxin Duan, Zhe Xu, Wenjing Liu, Yueli Ni, Yongping Li, Lu Yuan, Zhuoran Teng, Yurong Dong, Ziyuan Bai, Asif Shahzad, Jianshan Zhang, Yu Dou, Jiaojiao Xia, Hanyue Shao, Zhe Yang, Qiao Zhang
    Abstract:

    Clear cell renal cell carcinoma (ccRCC) is an aggressive malignancy with a complex and immunosuppressive tumor microenvironment (TME). While aggrephagy, a selective autophagy process, has been linked to cancer, its role in ccRCC remains unclear. Through integrated multi-omics analysis of single-cell and bulk sequencing data, we constructed the first aggrephagy activity atlas in ccRCC TME,...

    Keywords: ccRCC; aggrephagy; tumor microenvironment; prognosis
    Timeline: First Posted 2025-11-18 | Last Updated 2025-11-18
    Metrics: Views: 572  |  Downloads: 344  |  Favorites: 2
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