Cellular water potential sensing via biomolecular condensation
Abstract
Water molecules, as solvents for biomolecules, are essential to cells. The water potential of the cell decreases under water-deficient conditions, yet how cells sense changes in water potential remains unknown. Here, we identify a sterile alpha motif (SAM)-containing protein, SAM8, that undergoes water potential-dependent condensation both in vivo and in vitro and is crucial for hyperosmotic stress tolerance and seed germination. We employ biophysical techniques, in vitro reconstitution, and bioimaging to demonstrate that SAM8 is strongly hydrated under normal water conditions, preventing its macroscopic condensation. A negatively charged patch determines SAM8 hydration by creating an electric field and micropolar environment. Water-deficient conditions weaken this hydration, thereby activating SAM8 condensation by reprogramming hydrogen-bond, electrostatic, and hydrophobic interactions. Furthermore, we demonstrate that SAM8 condensates selectively sequester RNA export factors, leading to nuclear retention of mRNAs and translational reprogramming under hyperosmotic stress. Our findings reveal a mechanism by which plant cells directly sense and respond to water status, shedding light on how they adapt to water-deficit conditions.
References
1 Watson, J. L. et al. Macromolecular condensation buffers intracellular water potential. Nature 623, 842–852 (2023).
2 Xiong, L. & Zhu, J. K. Molecular and genetic aspects of plant responses to osmotic stress. Plant Cell Environ 25, 131–139 (2002).
3 Slatyer, R. Plant-water relationships. London and New York: Academic Press (1967).
4 De Swaef, T. et al. On the pivotal role of water potential to model plant physiological processes. in silico Plants 4, 1–28 (2022).
5 Lau, E. Y. & Krishnan, V. V. Temperature dependence of protein-hydration hydrodynamics by molecular dynamics simulations. Biophys Chem 130, 55–64 (2007).
6 Lang, X., Shi, L., Zhao, Z. & Min, W. Probing the structure of water in individual living cells. Nat Commun 15, 5271 (2024).
7 Zhao, C., Zhang, H., Song, C., Zhu, J. K. & Shabala, S. Mechanisms of Plant Responses and Adaptation to Soil Salinity. Innovation (Camb) 1, 100017 (2020).
8 Alberti, S. & Hyman, A. A. Biomolecular condensates at the nexus of cellular stress, protein aggregation disease and ageing. Nat Rev Mol Cell Biol 22, 196–213 (2021).
9 Peng, J., Yu, Y. & Fang, X. Stress sensing and response through biomolecular condensates in plants. Plant Commun 6, 101225 (2025).
10 Yu, B., Chao, D. Y. & Zhao, Y. How plants sense and respond to osmotic stress. J Integr Plant Biol 66, 394–423 (2024).
11 Wang, B. et al. Condensation of SEUSS promotes hyperosmotic stress tolerance in Arabidopsis. Nat Chem Biol 18, 1361–1369 (2022).
12 Wang, Z. et al. A cytoplasmic osmosensing mechanism mediated by molecular crowding-sensitive DCP5. Science 386, eadk9067 (2024).
13 Ceriotti, M. et al. Nuclear Quantum Effects in Water and Aqueous Systems: Experiment, Theory, and Current Challenges. Chem Rev 116, 7529–7550 (2016).
14 Giubertoni, G., Bonn, M. & Woutersen, S. D(2)O as an Imperfect Replacement for H(2)O: Problem or Opportunity for Protein Research? J Phys Chem B 127, 8086–8094 (2023).
15 Tempra, C., Chamorro, V. C. & Jungwirth, P. Effects of water deuteration on thermodynamic and structural properties of proteins and biomembranes. J Phys Chem B 127, 1138–1143 (2023).
16 Bielskute, S. et al. Low amounts of heavy water increase the phase separation propensity of a fragment of the androgen receptor activation domain. Protein Sci 30, 1427–1437, doi:10.1002/pro.4110 (2021).
17 Reslan, M. & Kayser, V. The effect of deuterium oxide on the conformational stability and aggregation of bovine serum albumin. Pharm Dev Technol 23, 1030–1036, doi:10.1080/10837450.2016.1268157 (2018).
18 Zhang, H. et al. Large-scale identification of potential phase separation proteins from plants using a cell-free system. Mol Plant 16, 310–313 (2023).
19 Fabregas, N., Yoshida, T. & Fernie, A. R. Role of Raf-like kinases in SnRK2 activation and osmotic stress response in plants. Nat Commun 11, 6184 (2020).
20 Doan, L. C., Dahanayake, J. N., Mitchell-Koch, K. R., Singh, A. K. & Vinh, N. Q. Probing Adaptation of Hydration and Protein Dynamics to Temperature. ACS Omega 7, 22020–22031 (2022).
21 Denay, G., Vachon, G., Dumas, R., Zubieta, C. & Parcy, F. Plant SAM-Domain Proteins Start to Reveal Their Roles. Trends Plant Sci 22, 718–725 (2017).
22 Seif, E. et al. Phase separation by the polyhomeotic sterile alpha motif compartmentalizes Polycomb Group proteins and enhances their activity. Nat Commun 11, 5609 (2020).
23 Bienz, M. Head-to-Tail Polymerization in the Assembly of Biomolecular Condensates. Cell 182, 799–811 (2020).
24 Xu, X., Fonseca de Lima, C. F., Vu, L. D. & De Smet, I. When drought meets heat - a plant omics perspective. Front Plant Sci 14, 1250878 (2023).
25 Andre, A. A. M. & Spruijt, E. Liquid-Liquid Phase Separation in Crowded Environments. Int J Mol Sci 21, 5908 (2020).
26 Leng, C. et al. Probing the Surface Hydration of Nonfouling Zwitterionic and PEG Materials in Contact with Proteins. ACS Appl Mater Interfaces 7, 16881–16888 (2015).
27 Vincenzi, M., Mercurio, F. A. & Leone, M. About TFE: Old and New Findings. Curr Protein Pept Sci 20, 425–451 (2019).
28 Wang, Y. et al. Biomolecular condensates mediate bending and scission of endosome membranes. Nature 634, 1204–1210 (2024).
29 Makan, A. C., Spallek, M. J., du Toit, M., Klein, T. & Pasch, H. Advanced analysis of polymer emulsions: Particle size and particle size distribution by field-flow fractionation and dynamic light scattering. J Chromatogr A 1442, 94–106 (2016).
30 Some, D., Amartely, H., Tsadok, A. & Lebendiker, M. Characterization of Proteins by Size-Exclusion Chromatography Coupled to Multi-Angle Light Scattering (SEC-MALS). J Vis Exp, e59615 (2019).
31 van Dop, M. et al. DIX Domain Polymerization Drives Assembly of Plant Cell Polarity Complexes. Cell 180, 427–439 (2020).
32 Fossat, M. J., Zeng, X. & Pappu, R. V. Uncovering Differences in Hydration Free Energies and Structures for Model Compound Mimics of Charged Side Chains of Amino Acids. J Phys Chem B 125, 4148–4161 (2021).
33 Laage, D., Elsaesser, T. & Hynes, J. T. Water Dynamics in the Hydration Shells of Biomolecules. Chem Rev 117, 10694–10725 (2017).
34 Dai, Y. et al. Interface of biomolecular condensates modulates redox reactions. Chem 9, 1594–1609 (2023).
35 Zhu, L., Pan, Y., Hua, Z., Liu, Y. & Zhang, X. Ionic Effect on the Microenvironment of Biomolecular Condensates. J Am Chem Soc 146, 14307–14317 (2024).
36 Ye, S. et al. Micropolarity governs the structural organization of biomolecular condensates. Nat Chem Biol 20, 443–451 (2024).
37 Kagale, S. et al. The emerging biofuel crop Camelina sativa retains a highly undifferentiated hexaploid genome structure. Nat Commun 5, 3706 (2014).
38 Kohler, A. & Hurt, E. Exporting RNA from the nucleus to the cytoplasm. Nat Rev Mol Cell Biol 8, 761–773 (2007).
39 Singh, G., Pratt, G., Yeo, G. W. & Moore, M. J. The Clothes Make the mRNA: Past and Present Trends in mRNP Fashion. Annu Rev Biochem 84, 325–354 (2015).
40 Pacheco-Fiallos, B. et al. mRNA recognition and packaging by the human transcription–export complex. Nature 616, 828–835, doi:10.1038/s41586-023-05904-0 (2023).
41 Beck, M. & Hurt, E. The nuclear pore complex: understanding its function through structural insight. Nat Rev Mol Cell Biol 18, 73–89 (2017).
42 Pfaff, C. et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol 177, 226–240 (2018).
43 Koroleva, O. A. et al. Dynamic behavior of Arabidopsis eIF4A-III, putative core protein of exon junction complex: fast relocation to nucleolus and splicing speckles under hypoxia. Plant Cell 21, 1592–1606 (2009).
44 Feric, M. et al. Coexisting Liquid Phases Underlie Nucleolar Subcompartments. Cell 165, 1686–1697 (2016).
45 Mukherjee, S. & Schafer, L. V. Thermodynamic forces from protein and water govern condensate formation of an intrinsically disordered protein domain. Nat Commun 14, 5892 (2023).
46 Banani, S. F., Lee, H. O., Hyman, A. A. & Rosen, M. K. Biomolecular condensates: organizers of cellular biochemistry. Nat Rev Mol Cell Biol 18, 285–298 (2017).
47 Pakos-Zebrucka, K. et al. The integrated stress response. EMBO Rep 17, 1374–1395 (2016).
48 Tom Maniatis, R. R. An extensive network of coupling among gene expression machines. Nature 416, 499–506, doi:10.1038/416499a (2002).
49 Zander, G. et al. mRNA quality control is bypassed for immediate export of stress-responsive transcripts. Nature 540, 593–596, doi:10.1038/nature20572 (2016).
50 Zhang, H., Zhao, Y. & Zhu, J. K. Thriving under Stress: How Plants Balance Growth and the Stress Response. Dev Cell 55, 529–543 (2020).
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