Agentic Discovery of Cryomicroneedle Formulations
摘要
Cryomicroneedles offer a route to minimally invasive intradermal delivery of living cells, but their cryogenic formulations must reconcile cell protection with constraints on toxicity and device fabrication. Here we report an AI-assisted, closed-loop workflow for cryomicroneedle cryoprotectant discovery that combines literature curation, Gaussian-process surrogate modelling, Bayesian optimization, and sequential wet-lab validation. A curated dataset of 198 mesenchymal stem-cell cryopreservation formulations from 42 studies was converted into 21 ingredient features and used to train an uncertainty-aware literature prior. This model captured moderate structure in the literature data but failed prospectively, motivating iterative wet-lab correction. Across ten validation iterations and 106 wet-lab observations, the model progressively adapted to cryomicroneedle-specific outcomes: batch RMSE decreased from 41.21 to 6.86 percentage points, later-stage rank correlations became consistently positive, and the cumulative wet-lab predicted-versus-measured summary reached R2 = 0.942. The best validated formulation achieved 95.15% post-thaw viability with low DMSO, ectoin, ethylene glycol, and fetal bovine serum. However, high viability alone did not ensure intact cryomicroneedle formation, highlighting the need for future multi-objective optimization. These results demonstrate that agent-assisted computational infrastructure can make data-efficient formulation discovery more accessible to labs with minimal data expertise in-house. Project code is available at https://github.com/baitmeister/ML-for-CryoMN.参考文献
[1] Hao Chang, Sharon W. T. Chew, Mengjia Zheng, Daniel Chin Shiuan Lio, Christian Wiraja, Yu Mei, Xiaoyu Ning, Mingyue Cui, Aung Than, Peng Shi, Dongan Wang, Kanyi Pu, Peng Chen, Haiyan Liu, and Chenjie Xu. Cryomicroneedles for transdermal cell delivery. Nature Biomedical Engineering, 5(9):1008–1018, May 2021. doi: 10.1038/s41551-02100720-1.
[2] Mengjia Zheng, Tianli Hu, Yating Yang, Xuan Qie, Huaxin Yang, Yuyue Zhang, Qizheng Zhang, Ken-Tye Yong, Wei Liu, and Chenjie Xu. In situ-formed cryomicroneedles for intradermal cell delivery. NPG Asia Materials, 16, February 2024. doi: 10.1038/s41427024-00531-1.
[3] Shubhmita Bhatnagar, Kaushalkumar Dave, and Venkata Vamsi Krishna Venuganti. Microneedles in the clinic. Journal of Controlled Release, 260:164–182, August 2017. doi: 10.1016/j.jconrel.2017.05.029.
[4] David Whaley, Kimia Damyar, Rafal P. Witek, Alan Mendoza, Michael Alexander, and Jonathan R. T. Lakey. Cryopreservation: An overview of principles and cell-specific considerations. Cell Transplantation, 30, 2021. doi: 10.1177/0963689721999617.
[5] Kathryn A. Murray and Matthew I. Gibson. Chemical approaches to cryopreservation. Nature Reviews Chemistry, 6(8):579–593, August 2022. doi: 10.1038/s41570-022-00407-4.
[6] Bobak Shahriari, Kevin Swersky, Ziyu Wang, Ryan P. Adams, and Nando de Freitas. Taking the human out of the loop: A review of bayesian optimization. Proceedings of the IEEE, 104(1):148–175, January 2016. doi: 10.1109/JPROC.2015.2494218.
[7] Peter I. Frazier. A tutorial on bayesian optimization. CoRR, abs/1807.02811, 2018. doi: 10.48550/arXiv.1807.02811.
[8] Gary Tom, Stefan P. Schmid, Sterling G. Baird, Yang Cao, Kourosh Darvish, Han Hao, Stanley Lo, Sergio Pablo-Garc´ıa, Ella M. Rajaonson, Marta Skreta, Naruki Yoshikawa, Samantha Corapi, Gun Deniz Akkoc, Felix Strieth-Kalthoff, Martin Seifrid, and Al´an Aspuru-Guzik. Self-driving laboratories for chemistry and materials science. Chemical Reviews, 124(16):9633–9732, 2024. doi: 10.1021/acs.chemrev.4c00055.
[9] Xingyao Wang, Yangyi Chen, Lifan Yuan, Yizhe Zhang, Yunzhu Li, Hao Peng, and Heng Ji. Executable code actions elicit better llm agents. CoRR, abs/2402.01030, 2024. doi: 10.48550/arXiv.2402.01030.
[10] John Yang, Carlos E. Jimenez, Alexander Wettig, Kilian Lieret, Shunyu Yao, Karthik Narasimhan, and Ofir Press. SWE-agent: Agent-computer interfaces enable automated software engineering. Advances in Neural Information Processing Systems, 37, 2024. doi: 10.48550/arXiv.2405.15793.
[11] Chris Lu, Cong Lu, Robert Tjarko Lange, Yutaro Yamada, Shengran Hu, Jakob Foerster, David Ha, and Jeff Clune. Towards end-to-end automation of AI research. Nature,
651(8107):914–919, March 2026. doi: 10.1038/s41586-026-10265-5.
[12] Suzanne Fricke. Semantic scholar. Journal of the Medical Library Association, 106(1):145 147, 2018. doi: 10.5195/jmla.2018.280.
[13] Jason Priem, Heather A. Piwowar, and Richard Orr. OpenAlex: A fully-open index of scholarly works, authors, venues, institutions, and concepts. CoRR, abs/2205.01833, 2022. doi: 10.48550/arXiv.2205.01833.
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